PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07172g00019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 236aa    MW: 26422.4 Da    PI: 7.1397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07172g00019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.8e-21107156255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a+++a+ +++g
  Niben101Scf07172g00019.1 107 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEEAARAYDKAAIEFRG 156
                               59*******.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-32107164IPR001471AP2/ERF domain
CDDcd000186.23E-34107163No hitNo description
SMARTSM003803.3E-38107170IPR001471AP2/ERF domain
PROSITE profilePS5103225.001107164IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22107164IPR016177DNA-binding domain
PfamPF008476.9E-15107156IPR001471AP2/ERF domain
PRINTSPR003673.0E-12108119IPR001471AP2/ERF domain
PRINTSPR003673.0E-12130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MQRSNKRFRE DGTSYTDQNN QQFSHFPRLT GEEEYSVMVS ALKNVINGVP AEQEPCPFCR  60
IKGCLGCDIF GTTSSAAVNF AESKIVAADD NKKKSTIIPI AKKKKKNYRG VRQRPWGKWA  120
AEIRDPRKAA RVWLGTFNTA EEAARAYDKA AIEFRGPRAK LNFSFADYTE NQEQQSTSSS  180
SPQQLPEPQL QQGNNAEFGS EILDQLMGDN EIQDWLTMMN FNGDFSDSTG GNVPSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23106163159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191105KKKSTIIPIAKKKKK
2100106AKKKKKN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502425.11e-130PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ065e-33EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A1S4CMZ71e-129A0A1S4CMZ7_TOBAC; ethylene-responsive transcription factor ERF109-like
STRINGXP_009609381.11e-129(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-32redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]