PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07207g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19655.1 Da    PI: 9.0759
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07207g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.14.7e-181561147
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                              k+ien+  r+vtfskRr g+ K A+EL  LCd+++ v++fs+tgk +
  Niben101Scf07207g00003.1 15 KKIENEDDRYVTFSKRRSGLYKQASELVQLCDVDIRVVLFSPTGKPF 61
                              68******************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.581767IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-20766IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-23878IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-17929IPR002100Transcription factor, MADS-box
PfamPF003198.4E-221663IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEGKKTRGRP SIPMKKIENE DDRYVTFSKR RSGLYKQASE LVQLCDVDIR VVLFSPTGKP  60
FSFFHPTSEA IIDRFLNPNM LLSESTRLVA AHARHNVNEL NNRKELFDNI KEATSADSLL  120
LDSMKENSQR YRWESIEKFS ADEVKEYEAL LSAIVFNLNN RLKYLNXCR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019255069.11e-101PREDICTED: agamous-like MADS-box protein AGL29
SwissprotQ4PSU43e-24AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A1J6HY681e-100A0A1J6HY68_NICAT; Agamous-like mads-box protein agl29
STRINGXP_009595132.12e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-26AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]