PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07223g01009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 195aa    MW: 22543.4 Da    PI: 9.8371
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07223g01009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-0699122226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               k  lC ff + G+C  G +CkF+H+
  Niben101Scf07223g01009.1  99 KSILCEFFKA-GQCAKGFKCKFSHD 122
                               6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-697122IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-497123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15997124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-599123IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MPPKQQSKVD LAKKQKIIED KTFGLKNKKK SKNTVNPSNN LSSLKLILKK LIPRSQLYPF  60
CMLLCCKKKD EEKTKEEEMN ELFKGAISQP KVPVGVDPKS ILCEFFKAGQ CAKGFKCKFS  120
HDLNVQRKGE KIDIYSDNMR TMEDWDQEAL EKVVASKSQE YNKKKPTDIV CKYFLEAVEK  180
KQYTCKINIF NSFDP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238516.15e-77PREDICTED: zinc finger CCCH domain-containing protein 11-like
SwissprotQ9SK747e-72C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLS8E8E54e-77S8E8E5_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_13s0019g03490.t019e-73(Vitis vinifera)
STRINGXP_002525195.11e-72(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA568078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-70C3H family protein