PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07223g02009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 491aa    MW: 54603 Da    PI: 9.698
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07223g02009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.83.9e-32215271360
                               -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               DgynWrKYGqK+vkgs++prsYY+Ct+ +Cpvkkkvers  d+++ ei+Y+geHnh+k
  Niben101Scf07223g02009.1 215 DGYNWRKYGQKQVKGSKYPRSYYKCTHLKCPVKKKVERSF-DGQIAEIVYRGEHNHPK 271
                               9***************************************.***************85 PP
2WRKY98.73.6e-31407463258
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                               +Dg++WrKYGqK+v+gs +prsYYrCts++C+v+k ver+++dpk++++tYeg+Hnh
  Niben101Scf07223g02009.1 407 EDGFRWRKYGQKVVRGSSYPRSYYRCTSPKCNVRKFVERTTDDPKAFITTYEGKHNH 463
                               7******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-29203272IPR003657WRKY domain
SuperFamilySSF1182902.75E-25212272IPR003657WRKY domain
SMARTSM007747.1E-36213271IPR003657WRKY domain
PfamPF031067.3E-25215270IPR003657WRKY domain
PROSITE profilePS5081123.583215272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-31397466IPR003657WRKY domain
SuperFamilySSF1182908.24E-27401466IPR003657WRKY domain
PROSITE profilePS5081132.099401466IPR003657WRKY domain
SMARTSM007749.0E-35406465IPR003657WRKY domain
PfamPF031062.1E-24407463IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MLCYESKWDS MGAQMNSQQT NMEVNEGAKI AIARPVASRP RCPIYKSFSE LLAGAIDISS  60
TDVHSETAVT AIRPRTVRLK PATTNALVGD LSSQGGTSGA PVGSRSDNIL LSVEKPKVLY  120
KPMAKLAPSK TLPLLENKGT SASDQQREVA DGEARVQSAN EVKQQHDLTI GSQQNRLAKS  180
RQDKKIVHST IVSENTEEVE QSLINTSNVD RPSYDGYNWR KYGQKQVKGS KYPRSYYKCT  240
HLKCPVKKKV ERSFDGQIAE IVYRGEHNHP KPQTLKRNLS DGQGRAALCN ETSKGTNNPV  300
WSNQHPQMSV GYTCGMENQN DVGLPIHSAY SSKTPCFYDP SAATEMHTAV QNSKDSTERS  360
KKLEADCDEP KTKRRKIEGQ FNEAGTSGES AFPYMPNQNT TDSEITEDGF RWRKYGQKVV  420
RGSSYPRSYY RCTSPKCNVR KFVERTTDDP KAFITTYEGK HNHCIPNRKS KSEASKTSSK  480
SSAIKEKSQA T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-29206466177Probable WRKY transcription factor 4
2lex_A9e-29206466177Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773393.10.0PREDICTED: WRKY transcription factor 44 isoform X1
TrEMBLA0A1U7W4620.0A0A1U7W462_NICSY; WRKY transcription factor 44 isoform X1
STRINGXP_009773393.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.12e-87WRKY family protein