PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07226g08005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 206aa    MW: 22859.2 Da    PI: 4.6185
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07226g08005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.9e-162574255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                               ykGVr++  +g+WvAeIr+p   + r  r +lg+f t  +Aa a++a + kl+g
  Niben101Scf07226g08005.1 25 TYKGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFETSHDAAMAYDAVAHKLYG 74
                              69****999.**********8...2.35************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.33E-292483No hitNo description
Gene3DG3DSA:3.30.730.107.1E-302583IPR001471AP2/ERF domain
SMARTSM003801.3E-312588IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-212583IPR016177DNA-binding domain
PROSITE profilePS5103221.8382582IPR001471AP2/ERF domain
PfamPF008475.6E-112574IPR001471AP2/ERF domain
PRINTSPR003672.5E-92637IPR001471AP2/ERF domain
PRINTSPR003672.5E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MKISQATSRK GCMRGKGGPE NASCTYKGVR QRTWGKWVAE IREPNRGPRL WLGTFETSHD  60
AAMAYDAVAH KLYGDNAKLN FPHMKTKNQG QNSTGSSSST YRTGVPETVE MENESLFFNN  120
DFESSCYSGE QASFPLLDNK KVEEDNNDEG VAFGGMWEDL NVNLPEIDDS SIWAEAKATT  180
LFQAVNEPGM FAGNLGDGIE YPPWYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-192682360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-182682663ATERF1
3gcc_A1e-182682663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016476955.11e-140PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_016476956.11e-140PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_016476957.11e-140PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_016476958.11e-140PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_016476959.11e-140PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_016476960.11e-140PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A1S4AJT11e-138A0A1S4AJT1_TOBAC; dehydration-responsive element-binding protein 2D-like
STRINGXP_009767453.11e-130(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-48ERF family protein