PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07231g02017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 180aa    MW: 20690.5 Da    PI: 7.2165
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07231g02017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.67.8e-29959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krie+k  rqvtfskRr+g+lKKA+ELS+LCda+vavi+fs++g+ly++ss
  Niben101Scf07231g02017.1  9 KRIEDKNSRQVTFSKRRKGLLKKAKELSILCDADVAVIVFSNRGRLYDFSS 59
                              79***********************************************96 PP
2K-box44.37.6e-161001692998
                     K-box  29 enLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                               e Lq+  R+l    +++Ls+ +L +Le++L+++l + Rs K+++++e+i+  ++kek l+eenk L+++ 
  Niben101Scf07231g02017.1 100 ELLQTVERQLEEPAVDDLSVTDLVHLENNLQTALMQARSSKMHMMIESIKSHREKEKLLSEENKHLENQC 169
                               7899999***********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.735161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-30278IPR002100Transcription factor, MADS-box
CDDcd002654.78E-36273No hitNo description
PRINTSPR004043.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.04285175IPR002487Transcription factor, K-box
PfamPF014862.1E-13100169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010048Biological Processvernalization response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGRKKVEIKR IEDKNSRQVT FSKRRKGLLK KAKELSILCD ADVAVIVFSN RGRLYDFSST  60
NSITENVQRY HSHVEAEKDI SAGVLDTEHS KYSSFITVGE LLQTVERQLE EPAVDDLSVT  120
DLVHLENNLQ TALMQARSSK MHMMIESIKS HREKEKLLSE ENKHLENQCP ETVQIMSFQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-19161161Myocyte-specific enhancer factor 2B
1tqe_Q1e-19161161Myocyte-specific enhancer factor 2B
1tqe_R1e-19161161Myocyte-specific enhancer factor 2B
1tqe_S1e-19161161Myocyte-specific enhancer factor 2B
6c9l_A1e-19161161Myocyte-specific enhancer factor 2B
6c9l_B1e-19161161Myocyte-specific enhancer factor 2B
6c9l_C1e-19161161Myocyte-specific enhancer factor 2B
6c9l_D1e-19161161Myocyte-specific enhancer factor 2B
6c9l_E1e-19161161Myocyte-specific enhancer factor 2B
6c9l_F1e-19161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795052.11e-107PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
RefseqXP_016435771.11e-107PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
TrEMBLA0A1S3X7B11e-105A0A1S3X7B1_TOBAC; agamous-like MADS-box protein AGL27 isoform X1
TrEMBLA0A1U7XSL91e-105A0A1U7XSL9_NICSY; agamous-like MADS-box protein AGL27 isoform X1
STRINGXP_009795052.11e-106(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.17e-48MIKC_MADS family protein