PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07242g05005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 80aa MW: 9128.61 Da PI: 10.7381

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07242g05005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.1	6.3e-30	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s Niben101Scf07242g05005.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSTFS 58 78***********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.857	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.5E-38	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.92E-37	2	75	No hit	No description
SuperFamily	SSF55455	1.15E-31	2	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-27	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.9E-28	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN 60 KSIEDIMARY VNLPEHDRGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	4e-19	1	80	1	79	MEF2 CHIMERA
6byy_B	4e-19	1	80	1	79	MEF2 CHIMERA
6byy_C	4e-19	1	80	1	79	MEF2 CHIMERA
6byy_D	4e-19	1	80	1	79	MEF2 CHIMERA
6bz1_A	4e-19	1	80	1	79	MEF2 CHIMERA
6bz1_B	4e-19	1	80	1	79	MEF2 CHIMERA
6bz1_C	4e-19	1	80	1	79	MEF2 CHIMERA
6bz1_D	4e-19	1	80	1	79	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012851548.1	6e-50	PREDICTED: MADS-box protein GGM13-like
Refseq	XP_015158292.1	1e-49	PREDICTED: agamous-like MADS-box protein AGL104
Refseq	XP_016568821.1	2e-49	PREDICTED: agamous-like MADS-box protein AGL104 isoform X2
Swissprot	Q9LM46	8e-38	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A022QCZ8	6e-49	A0A022QCZ8_ERYGU; Uncharacterized protein
TrEMBL	A0A1U8GBX3	4e-48	A0A1U8GBX3_CAPAN; agamous-like MADS-box protein AGL104 isoform X2
TrEMBL	A0A2G2X1P3	3e-48	A0A2G2X1P3_CAPBA; Uncharacterized protein
STRING	Solyc04g078300.2.1	8e-49	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6183	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	3e-40	AGAMOUS-like 104

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]