PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07278g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 410aa MW: 44832.1 Da PI: 9.7578

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07278g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.6	1.1e-12	332	379	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +r rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L+k+ e+ Niben101Scf07278g00007.1 332 RRRRRMIKNRESAARSRARKQAYTLELEAEVAKLKEINEELRKKQAEI 379 689**************************************9765443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.5E-11	328	389	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.841	330	379	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.9E-11	332	389	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.8E-12	332	382	No hit	No description
SuperFamily	SSF57959	4.5E-9	332	379	No hit	No description
PROSITE pattern	PS00036	0	335	350	IPR004827	Basic-leucine zipper domain
CDD	cd14707	4.60E-22	337	386	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MGSYLNFKNF ADSPQPESNG GNLMCNGNFP LARQSSIYSL TFDELQTTFS GLGKDFGSMN 60 MEDLLKSIWT AEETQATAST TGGVDESIAA GNLQRQGSLT LPRTLSQKTV DEVWRDFQKE 120 TVSAKEGSDT GNLNFGQRQS ALGEMTLEEF LVKAGVVRED MQCTNSNGIT FDNGSSQQSN 180 NNGLNIAFQQ PAQNNGLLIN QIAANNMLNV VGATPSQQQP QHQQPLFPKQ TTVAFASPMQ 240 LSNNGLLDSP RTRAPVVGMS GSSVNTNMAQ GGVRGMTGFH NGVSPAKGGS PGNDFAARSH 300 TDTSSLSPSP YAFNEGGRGR RSGSSLEKVV ERRRRRMIKN RESAARSRAR KQAYTLELEA 360 EVAKLKEINE ELRKKQAEII EKQKNQLLEK RNMPCGYKFR CLRRTLTGPW

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MGSYLNFKNF ADSPQPESNG GNLMCNGNFP LARQSSIYSL TFDELQTTFS GLGKDFGSMN  60
MEDLLKSIWT AEETQATAST TGGVDESIAA GNLQRQGSLT LPRTLSQKTV DEVWRDFQKE  120
TVSAKEGSDT GNLNFGQRQS ALGEMTLEEF LVKAGVVRED MQCTNSNGIT FDNGSSQQSN  180
NNGLNIAFQQ PAQNNGLLIN QIAANNMLNV VGATPSQQQP QHQQPLFPKQ TTVAFASPMQ  240
LSNNGLLDSP RTRAPVVGMS GSSVNTNMAQ GGVRGMTGFH NGVSPAKGGS PGNDFAARSH  300
TDTSSLSPSP YAFNEGGRGR RSGSSLEKVV ERRRRRMIKN RESAARSRAR KQAYTLELEA  360
EVAKLKEINE ELRKKQAEII EKQKNQLLEK RNMPCGYKFR CLRRTLTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774081.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Swissprot	Q9M7Q4	3e-99	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A1U7WA27	0.0	A0A1U7WA27_NICSY; ABSCISIC ACID-INSENSITIVE 5-like protein 7
STRING	XP_009774081.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA776	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34000.2	9e-73	abscisic acid responsive elements-binding factor 3

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]