PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07346g04001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BES1
Protein Properties Length: 665aa    MW: 75044.3 Da    PI: 6.2745
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07346g04001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822155.44e-48562003143
                    DUF822   3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagss 85 
                               + rk+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+ve+DGttyr++  p+  ++a+ +g  
  Niben101Scf07346g04001.1  56 KSRKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPVRADMNDVLAALARQAGWTVEPDGTTYRQSPPPPtnNNASNMGPY 140
                               789*******************************************************************999988888899999 PP

                    DUF822  86 asaspesslq.sslkssalaspvesysaspksssfpspssldsislasa.asllpvlsvl 143
                               + +s+ s+++ ssl+++++++ v+   ++p+ ++++sp+s+dsi ++ + ++  +++s+ 
  Niben101Scf07346g04001.1 141 QVMSVGSPVSgSSLRNCSTRASVDCHPSVPRINESLSPASFDSIVVTGSdTKADKFTSTS 200
                               99******************************************9987743333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056879.0E-5156205IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514455.55E-156227659IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.1E-169229658IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.2E-83250633IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.0E-54266280IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.0E-54287305IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.0E-54309330IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.0E-54402424IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.0E-54475494IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.0E-54509525IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.0E-54526537IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.0E-54544567IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.0E-54580602IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MNNHIPHQSI PNYTQDPDPQ FPNPNEDPIP NPPPQPQPRR PRGFAATNTA AGTGNKSRKE  60
REKEKERTKL RERHRRAITS RMLAGLRQYG NFPLPVRADM NDVLAALARQ AGWTVEPDGT  120
TYRQSPPPPT NNNASNMGPY QVMSVGSPVS GSSLRNCSTR ASVDCHPSVP RINESLSPAS  180
FDSIVVTGSD TKADKFTSTS TMNSTECLEA GQLMQELHSG EHGIDLSGTQ YVPVFVMLSS  240
GLINNFCQLM DPDSVKQELQ QLKSLKIDGV VVNCWWGIVE SWVPQKYEWS GYRELFNIIR  300
DFKLKLQVVM AFHEYGGSDT SGMFISLPQW VLEIGKDNQD IFFTDRQGRR NTECLSWGID  360
KERVLRGRTA IEVYFDMMRS FRTEFDDLFA DGLISAVEIG LGASGELKYP SFSERMGWRY  420
PGIGEFQCYD KYSLQNLRKA ATSRGHSFWA KGPDNAGYYN SKPHETGFFC ERGDYDSYYG  480
RFFLHWYRHV LIDHADNVLS LATLAFEGVQ IVVKIPAIYW WYRTSSHAAE VTAGYYNPTN  540
QDGYSPVFEV LKKHSVTVKF ICSGFQVPET DDALADPDGL SWQILNSAWD KALPVAGQNA  600
FPCYDREGLM RLVETAKPRN DPDHHLFTFL AFQQPSPLVQ SAICISELDY FIKSMHGEII  660
NNVES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12223165811444Beta-amylase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016463704.10.0PREDICTED: beta-amylase 8-like
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1S3ZH490.0A0A1S3ZH49_TOBAC; Beta-amylase
STRINGXP_009769112.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]