PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07355g01004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 145aa MW: 16633.1 Da PI: 7.7179

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07355g01004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123	1.5e-38	5	105	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk lrr+C++dC++ pyfp ++p++f +vh+++Gasnv k+l +++e++r d++++l+yeA +r++dPvyG+vg+i+ l++ Niben101Scf07355g01004.1 5 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSCVHRIYGASNVGKMLLQVQEHQRADVADTLYYEAYCRIKDPVYGCVGIITVLHE 89 6********************************************************************************** PP DUF260 86 qleqlkaelallkeel 101 ++ ql+ +la++++e+ Niben101Scf07355g01004.1 90 EIYQLQCQLAKVQAEI 105 *********99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.028	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-38	5	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MTSTRCAACK QLRRRCPSDC IFLPYFPPNN PQRFSCVHRI YGASNVGKML LQVQEHQRAD 60 VADTLYYEAY CRIKDPVYGC VGIITVLHEE IYQLQCQLAK VQAEIDLLKA QSPVQGQQEV 120 EFSAKLLADQ NGLLSSFHPS FHWFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-35	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-35	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019238658.1	1e-93	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	1e-46	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1J6KI98	2e-92	A0A1J6KI98_NICAT; Lob domain-containing protein 24
STRING	XP_009589427.1	2e-91	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-49	LOB domain-containing protein 24