PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07391g00013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 619aa    MW: 68658.1 Da    PI: 6.2094
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07391g00013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS53.16.2e-17293378186
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                               l++lL++cAea+ s++ +  ++l+arl +lasp+g +p+ Rl+ayfteALa r+ar ++++++++pp++ ++   +++ +al+l+
  Niben101Scf07391g00013.1 293 LISLLVSCAEAIGSRNVTGLNQLIARLGDLASPRGgSPISRLTAYFTEALALRVARIWPHIFHIIPPRDLDR-LDDDSSTALRLL 376
                               5799******************************999******************************99974.455556666776 PP

                      GRAS  85 se 86 
                               ++
  Niben101Scf07391g00013.1 377 NQ 378
                               65 PP
2GRAS210.59.4e-65374580166373
                      GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                               + + ++l+++fef++ v++rled++l++L+vk+gE++aVn++lq+hrll +s       +++L l++s++P+++ ++eqea+hn+
  Niben101Scf07391g00013.1 374 RLLNQALNLDFEFHP-VVDRLEDVRLWMLHVKEGESVAVNCALQMHRLLYDSSGGIL--RDFLGLIRSTNPTIILMAEQEAEHNE 455
                               5566789********.7*******************************966655444..79************************ PP

                      GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                               +s+ +r++++l+yy+a+fds+  +lp +s  rik+E+  ++r+i+n++aceg++r+erhe ++kWr+ +e+ GF+   ++e++  
  Niben101Scf07391g00013.1 456 PSLEARLVNSLRYYAAVFDSIGFSLPLDSPSRIKIEEL-FARDIRNIIACEGRDRTERHECFGKWRKLMEQGGFRCTGITERELL 539
                               ************************************98.********************************************** PP

                      GRAS 336 qaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                               q ++ll++++ + yrv    +++++l+l W d+pL +vSaW
  Niben101Scf07391g00013.1 540 QSQMLLKMYSCEDYRVIkqgNDNAALTLSWLDQPLCTVSAW 580
                               **********888*9984445588999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.57311558IPR005202Transcription factor GRAS
PfamPF035143.3E-62374580IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MLAGCSSTLL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CNFARKDNPR SQSIRPVGSL  60
SVDKPTETKN SSCSLKQNIR LPPSPTTAQT SSYVEGRRES KDEFWGKGRS LKRYADQGCF  120
DDDNCMSRGA KRKKGNRKSV DCSEEVEGYG LSLGQLGGGN FWLQSGYNVS RSVQAAAPFS  180
FSCSGEEESV CYVPSEVISP PPPLSNNPWI DSIVTEITNF GDKNVSTSQD PAKEASVSSA  240
SLDSHGLVLR LNENPVEHEI GNGSRPPDPN DRSEVVAAHN EHNNHCEDDA AELISLLVSC  300
AEAIGSRNVT GLNQLIARLG DLASPRGGSP ISRLTAYFTE ALALRVARIW PHIFHIIPPR  360
DLDRLDDDSS TALRLLNQAL NLDFEFHPVV DRLEDVRLWM LHVKEGESVA VNCALQMHRL  420
LYDSSGGILR DFLGLIRSTN PTIILMAEQE AEHNEPSLEA RLVNSLRYYA AVFDSIGFSL  480
PLDSPSRIKI EELFARDIRN IIACEGRDRT ERHECFGKWR KLMEQGGFRC TGITERELLQ  540
SQMLLKMYSC EDYRVIKQGN DNAALTLSWL DQPLCTVSAW SPLDAAGSSS SYYQPNRFVE  600
MSKKRNSFRS NCIGGGQVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-26350582142379Protein SCARECROW
5b3h_D2e-26350582142379Protein SCARECROW
5hyz_A1e-26369580163374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609251.10.0PREDICTED: scarecrow-like protein 28 isoform X1
TrEMBLA0A1J6JVQ60.0A0A1J6JVQ6_NICAT; Scarecrow-like protein 28
STRINGXP_009609251.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.14e-82GRAS family protein