PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07437g04013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 248aa MW: 27918.5 Da PI: 6.2399

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07437g04013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.4	2.5e-08	163	210	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+el+P + k + a +L ++Y++sLq Niben101Scf07437g04013.1 163 SHSLAERLRREKINEKLRCLQELVPGC----YKTMGMAVMLDVIINYVRSLQ 210 8*************************8....355888888999999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.29E-9	157	213	No hit	No description
SuperFamily	SSF47459	2.88E-16	157	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-15	159	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.231	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	163	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-7	165	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MKNLDAYKNW FLDVTRLALN SSSSSSPFMN SNNMELLNSI NLEAENFSSN INQHGFLALS 60 SEDFSNHHQL PNMAFHADMN ISNSISTQNI YDPAAAQFFT LGGPSSYGCS SNMNSIPDQS 120 ESILNNNIPT SPSLRKRNNQ KEAAEKPREV VHVRAKRGQA TDSHSLAERL RREKINEKLR 180 CLQELVPGCY KTMGMAVMLD VIINYVRSLQ NQIDFLSMKL SAASLFYDFN SSEMDDMDSM 240 QVRLCILI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009779032.1	1e-137	PREDICTED: transcription factor bHLH75-like
TrEMBL	A0A1U7WGF5	1e-135	A0A1U7WGF5_NICSY; transcription factor bHLH75-like
STRING	XP_009779032.1	1e-136	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9069	17	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	1e-51	bHLH family protein