PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07449g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 708aa    MW: 80772.4 Da    PI: 8.71
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07449g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-0792185147
                               TSSS-HHHHHHHHHHHHHTTTT...............................................-HHHHHHHHTTTS-HH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...............................................tWktIartmgkgRtlk 38 
                               r+ W++eE e l+++vkq   +                                               +W+ +a++   gR++ 
  Niben101Scf07449g00003.1  92 RKEWSKEERENLAKGVKQQFQEmllqrsvdllsnedgrsgesgdldgliasirdvvitpetmrlflpkvNWDQVAAMYIPGRSGP 176
                               789****************999*****************************************************99888***** PP

                               HHHHHHHHH CS
           Myb_DNA-binding  39 qcksrwqky 47 
                               +c+srw+++
  Niben101Scf07449g00003.1 177 ECQSRWLNW 185
                               *******98 PP
2Myb_DNA-binding409.2e-13245289146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               r  WT+eEd +l  av+ +G  +W  +a+ +  gRt+ qc +rw k
  Niben101Scf07449g00003.1 245 RREWTEEEDIKLCAAVETFGESNWQFVASVIE-GRTGPQCSNRWIK 289
                               678*****************************.***********87 PP
3Myb_DNA-binding42.12.1e-13299356246
                               SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 
                               g+W+++Ed++l+ av ++ ++               Wk+Ia++++ gRt  qc++rw +
  Niben101Scf07449g00003.1 299 GKWSADEDKRLKVAVMLFHPKswrnigqsvpcrapIWKKIAQYVP-GRTHVQCRERWVN 356
                               89*****************99************************.***********87 PP
4Myb_DNA-binding47.93.1e-15366408347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                WT+eEd++l+ a+ ++G   W+++a++++  Rt++qc+ rw  +
  Niben101Scf07449g00003.1 366 EWTEEEDLKLKSAIDEHGYS-WSKVAACVP-PRTDNQCRRRWKVL 408
                               7*****************99.*********.9**********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.86487186IPR017877Myb-like domain
SMARTSM007171.5E-591188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-692125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-5161207IPR009057Homeodomain-like
SuperFamilySSF466891.58E-12167236IPR009057Homeodomain-like
PROSITE profilePS500906.829187239IPR017877Myb-like domain
SMARTSM007170.16191241IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-8208245IPR009057Homeodomain-like
SuperFamilySSF466891.66E-18225296IPR009057Homeodomain-like
PROSITE profilePS5129418.484240295IPR017930Myb domain
SMARTSM007173.7E-12244293IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-15246296IPR009057Homeodomain-like
CDDcd001671.82E-9247291No hitNo description
PfamPF139212.5E-11248309No hitNo description
SuperFamilySSF466891.27E-6282333IPR009057Homeodomain-like
PROSITE profilePS500908.873293358IPR017877Myb-like domain
SMARTSM007176.7E-10297360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-13299347IPR009057Homeodomain-like
CDDcd001671.88E-6300358No hitNo description
SuperFamilySSF466894.3E-25338410IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-21348406IPR009057Homeodomain-like
PROSITE profilePS5129422.708359413IPR017930Myb domain
SMARTSM007172.7E-14363411IPR001005SANT/Myb domain
PfamPF002493.2E-14366407IPR001005SANT/Myb domain
CDDcd001671.51E-11366409No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MMQIEARMEE LKKLKERVKI LKGFQIASRK RMGRALSQKR DARVQLISLP KQKCSSKLQG  60
KKLSAIHYGP PENSHVASVR EALTHFAVSL SRKEWSKEER ENLAKGVKQQ FQEMLLQRSV  120
DLLSNEDGRS GESGDLDGLI ASIRDVVITP ETMRLFLPKV NWDQVAAMYI PGRSGPECQS  180
RWLNWEDPLI KHEEWDILEE KALLHAVQRN EMSNWIDISA SLGVCRTPFQ CLSHYQRSLN  240
ASILRREWTE EEDIKLCAAV ETFGESNWQF VASVIEGRTG PQCSNRWIKS LHPTRKRCGK  300
WSADEDKRLK VAVMLFHPKS WRNIGQSVPC RAPIWKKIAQ YVPGRTHVQC RERWVNSLDP  360
SLKLDEWTEE EDLKLKSAID EHGYSWSKVA ACVPPRTDNQ CRRRWKVLFP DEVPMLQEAK  420
KIRREAFISN FVDREEERPA LKPNDIVPTH KLSYRAGCGT GSANKRRKLR PRAARDDSAP  480
RCDALCELER RHLEESEGPE SSDLLNNSSL SSRDQEIERI SDGEEAFEQG SHDLTKNKRP  540
SKLHPRRTKQ LAPNDMVPEA SASSKVESTT ACDYICKNRR TSSLVKKKRT IASQESSSSL  600
PNLSSSMTVV EEVDSHVQDR RMTMNIMDKR HSTSGYDDSC VNSEGPPLCR PHLDKGTADL  660
DAGENSVWEN ASTIGPLESS LYFQKNAVVC TDENARQLKX VFGKMLLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-261954059155MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-261954059155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770188.10.0PREDICTED: uncharacterized protein LOC104220923 isoform X1
RefseqXP_016482191.10.0PREDICTED: uncharacterized protein LOC107803091 isoform X1
TrEMBLA0A1S4B0420.0A0A1S4B042_TOBAC; uncharacterized protein LOC107803091 isoform X1
TrEMBLA0A1U7VUY70.0A0A1U7VUY7_NICSY; uncharacterized protein LOC104220923 isoform X1
STRINGXP_009770188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108762124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-146myb domain protein 4r1