PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07465g03010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 191aa MW: 22490.3 Da PI: 8.4143

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07465g03010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24	8.6e-08	10	41	3	34
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 e++++rr+++N eAAr+s RKka++++Le+ Niben101Scf07465g03010.1 10 ESQVQRRLAQNCEAARKSHMRKKAYVQQLETS 41 6789*************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-5	5	53	No hit	No description
SuperFamily	SSF57959	3.78E-5	14	47	No hit	No description
Pfam	PF14144	5.7E-20	96	168	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MWKVIYEHME SQVQRRLAQN CEAARKSHMR KKAYVQQLET SRLKLAQLEL ELERARQQGL 60 YMLGSNANMG ILETINPAAF EMEYSHWVEE QQKKNAELQS ILQFPVSAME LQLPVENVLS 120 HYFNLFRMKA DTAMDDVFYL MFGMWRTSVE RIFLRIGGFK PSDLINVVLG AFLLLFFLKI 180 YYNNLLLMSF S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019256722.1	4e-92	PREDICTED: transcription factor TGA1-like
Swissprot	Q39237	5e-63	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A1J6HTG2	9e-91	A0A1J6HTG2_NICAT; Transcription factor tga1
STRING	XP_009776929.1	2e-91	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.6	3e-52	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]