PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07474g01009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 565aa    MW: 63358.3 Da    PI: 4.8745
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07474g01009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.96.7e-1371975653374
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               + L++cA a+++g+ e+a++++++l++++s +g+p++R aay++eALaar+a s+++lykal+++e+     se+l+a+++++ev
  Niben101Scf07474g01009.1 197 QMLFSCAAAIQDGNIEQASSMINELRQMVSIQGEPLERTAAYMVEALAARMATSGKGLYKALKCKEAL---FSERLSAMQVLFEV 278
                               79*****************************************************************8...9************* PP

                      GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                               +P+++f++++aN aIlea++ e+rvHiiDfdi+qG Q+ +Llq+Las p++pp+lR+Tg+++pes+      l+ +g rL+++A+
  Niben101Scf07474g01009.1 279 CPYFRFGFMAANGAILEAFKDEKRVHIIDFDINQGSQYYTLLQTLASMPGKPPHLRLTGIDDPESVqrAIGGLNVIGLRLEELAK 363
                               ****************************************************************99777789************* PP

                      GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                                +++pfef++ va++++ +++ +L++++gEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++Fl+
  Niben101Scf07474g01009.1 364 DFKIPFEFQA-VASNTALVTPAMLNCHSGEALIVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTTPFLQ 447
                               **********.7************************************************************************* PP

                      GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                               r++e  +yysa+f+sl+a+l+r+s+er++vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+p p+s +++++++ l
  Niben101Scf07474g01009.1 448 RVAEVYNYYSAVFESLDATLSRDSQERVNVERQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFSPSPISRNVYDSIQNL 532
                               ************************************************************************************* PP

                      GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +++++++ y+ +ee g+l +gW+d++L+++SaW+
  Niben101Scf07474g01009.1 533 IKQYSER-YKTKEEAGALHFGWEDKSLIVASAWK 565
                               *****66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.346169546IPR005202Transcription factor GRAS
PfamPF035142.3E-134197565IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MSLVRSVRTI GNGKLYFPND HNDNSGLSTS MFTKNAHGTM YATESSSTDS YDPKYLLDSP  60
SPSEELLNTS PSEVSGNPFH QRHSSSCQPS RDYDACQLSY DCEDIVRQRP DSLQYNDGRV  120
TLKLQELERV LFDDNEVDGD DVFARGQCMD IDDKWFSQIG TVLLHDSPKE STSTDSNISS  180
SSSYKEISVT APQTPKQMLF SCAAAIQDGN IEQASSMINE LRQMVSIQGE PLERTAAYMV  240
EALAARMATS GKGLYKALKC KEALFSERLS AMQVLFEVCP YFRFGFMAAN GAILEAFKDE  300
KRVHIIDFDI NQGSQYYTLL QTLASMPGKP PHLRLTGIDD PESVQRAIGG LNVIGLRLEE  360
LAKDFKIPFE FQAVASNTAL VTPAMLNCHS GEALIVNFAF QLHHMPDESV STVNQRDQLL  420
RMVKSLNPKL VTVVEQDMNT NTTPFLQRVA EVYNYYSAVF ESLDATLSRD SQERVNVERQ  480
CLARDIVNIV ACEGEERIER YEVAGKWRAR MMMAGFSPSP ISRNVYDSIQ NLIKQYSERY  540
KTKEEAGALH FGWEDKSLIV ASAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6320256426378Protein SCARECROW
5b3h_A1e-6320256425377Protein SCARECROW
5b3h_D1e-6320256425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766061.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_009766062.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_009766064.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_009766065.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_009766066.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_016474681.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_016474687.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_016474696.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_016474704.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_016474710.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_016474713.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A1S4ADI50.0A0A1S4ADI5_TOBAC; scarecrow-like protein 1
TrEMBLA0A1U7VM740.0A0A1U7VM74_NICSY; scarecrow-like protein 1
STRINGXP_009766061.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89672429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]