PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07508g01008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 76aa MW: 8613.21 Da PI: 10.7533

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07508g01008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78.3	5.7e-25	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie+ks rqvt++kRr+g++KKA+ LS+LCd++vav++fs +g+lye Niben101Scf07508g01008.1 9 KRIEEKSSRQVTLCKRRKGLIKKAKQLSILCDVDVAVVVFSGRGTLYES 57 79*********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	8.24E-26	1	71	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.6E-32	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.53	1	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-23	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.8E-23	10	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-23	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-23	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MGRKKVEMKR IEEKSSRQVT LCKRRKGLIK KAKQLSILCD VDVAVVVFSG RGTLYESSTP 60 SRFLHALLNI YIVSDS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778768.1	6e-36	PREDICTED: MADS-box transcription factor 21-like isoform X1
Refseq	XP_019237531.1	1e-34	PREDICTED: agamous-like MADS-box protein AGL27
Swissprot	Q8RU31	6e-22	MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBL	A0A1J6K0Z8	2e-44	A0A1J6K0Z8_NICAT; Mads-box transcription factor 21
STRING	XP_009778768.1	2e-35	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65050.2	3e-24	AGAMOUS-like 31

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dreni L, et al. The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant J., 2007. 52(4): p. 690-9 [PMID:17877710]