PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07593g03015.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 223aa MW: 25737.9 Da PI: 9.7522

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07593g03015.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.9	1.2e-10	61	97	1	40
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsK 40 ++ +hn+ Er+RR+++N +++Lr+llP+ +++Kl K Niben101Scf07593g03015.1 61 KKLSHNASERNRRKKMNFLYSTLRSLLPPT---NHQKLKK 97 6789*************************9...8888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.103	60	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.29E-7	61	114	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.9E-8	61	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-8	61	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-9	61	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MSSEWSFEEA QKYDQQNNNI LQNEITNDLF EGLHIDHNSP SSYQQQYSKE KIFHNQSLMA 60 KKLSHNASER NRRKKMNFLY STLRSLLPPT NHQKLKKEIE KLSQTKDLLL SKKADSFTQP 120 NNNNNNNQRN TTSSASISAT PLCNGQVLVQ ISTTQTSFPI SQVFQTLEED WYVLLNATSF 180 KSSGEKTFHN LHFQMQGTVG MEIQSLKTKL LVMFEKNQNR SLV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019264786.1	1e-121	PREDICTED: transcription factor ORG2-like isoform X2
TrEMBL	A0A1S3YVA5	1e-119	A0A1S3YVA5_TOBAC; transcription factor ORG2-like
TrEMBL	A0A1U7WL74	1e-114	A0A1U7WL74_NICSY; uncharacterized protein LOC104228545
STRING	XP_009779323.1	1e-114	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2226	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	2e-26	bHLH family protein