PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07645g04006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 115aa    MW: 12964.7 Da    PI: 9.636
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07645g04006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.61.9e-304494151
                   G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                              kprl+Wt +LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQ
  Niben101Scf07645g04006.1 44 KPRLKWTADLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQ 94
                              79************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.35941101IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-274294IPR009057Homeodomain-like
SuperFamilySSF466895.2E-154399IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-224497IPR006447Myb domain, plants
PfamPF002492.1E-94695IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MYHQQHQAAN MHPSTRMSFP ERHLFLQGGN VNGDSGLVLS TDAKPRLKWT ADLHERFIEA  60
VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQVNFYSL HGLQNTCQET RHFTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-214494252Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-214494252Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-214494151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-214494151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-214494151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-214494151Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-214494252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-214494252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-214494252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-214494252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-214494252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-214494252Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235137.11e-61PREDICTED: myb-related protein 2-like isoform X3
SwissprotQ9SQQ94e-41PHL9_ARATH; Myb-related protein 2
TrEMBLA0A1J6KU244e-60A0A1J6KU24_NICAT; Myb-related protein 2
STRINGXP_009770704.15e-60(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120621623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.11e-43G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]