PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07650g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 153aa    MW: 17603.3 Da    PI: 9.417
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07650g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000773254123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ C++ Fs+   L  H  +H
  Niben101Scf07650g00002.1 32 FECKTCNRKFSSFQALGGHRASH 54
                              89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.47E-831102No hitNo description
PfamPF139125.6E-123156IPR007087Zinc finger, C2H2
SMARTSM003550.193254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2423259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
PfamPF139123.6E-1079104IPR007087Zinc finger, C2H2
SMARTSM003550.4480102IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.74680102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MANCLMLFSN QSNDYHFDNI MKYNNSTTNQ VFECKTCNRK FSSFQALGGH RASHKKPRLN  60
MRELNNMQLF QFPNIKPKTH ECSICGLEFG LGQALGGHMR RHRAVMNNEK IGDPLRIPQV  120
VKKSKRVLCL DLNLTPLEND HLEFNLGADS VFF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771157.11e-106PREDICTED: zinc finger protein ZAT11-like
RefseqXP_016502413.11e-106PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD44e-37ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1S4CMG31e-104A0A1S4CMG3_TOBAC; zinc finger protein ZAT11-like
TrEMBLA0A1U7VTE11e-104A0A1U7VTE1_NICSY; zinc finger protein ZAT11-like
STRINGXP_009771157.11e-105(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-39C2H2 family protein