PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07663g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 217aa    MW: 23977.1 Da    PI: 5.3187
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07663g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind119.22.4e-37261162101
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y+++ed+++++++sw+e+g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F
  Niben101Scf07663g01004.1  26 FLTKTYQLVEDPSIDDVVSWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCF 101
                               9*****************************************************************99.........******** PP

                               XXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkk 101
                               ++g+k+ll++i+r+k
  Niben101Scf07663g01004.1 102 RRGEKSLLRDIQRRK 116
                               *************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.5E-5922115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.18E-3623115IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-3924115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-3326115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-212649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-216476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-217789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MIPPPIERNG GESTAGETAR YVPTPFLTKT YQLVEDPSID DVVSWNEDGS TFIVWNPTEF  60
ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFSNDC FRRGEKSLLR DIQRRKVVTP  120
IATPCAAVTA VVTVNAPPAQ TPRPVISTSD SGDEQVISSN SSTSGTAGLL LSCPTSEGFE  180
VLGLLIWLGQ SSPHKLAFGV ELGPMFILFS CWEKTNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-272611529129Heat shock factor protein 1
5d5v_B2e-272611529129Heat shock factor protein 1
5d5v_D2e-272611529129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488254.11e-100PREDICTED: heat stress transcription factor B-2b-like
RefseqXP_016488255.11e-100PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9SCW41e-60HFB2A_ARATH; Heat stress transcription factor B-2a
SwissprotQ9T0D32e-60HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1S4BH984e-99A0A1S4BH98_TOBAC; heat stress transcription factor B-2b-like
STRINGXP_009603015.11e-100(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-60HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]