PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07673g04009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 331aa    MW: 38237.1 Da    PI: 8.8067
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07673g04009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.31.5e-49351702128
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                pGfrFhPtdeelv++yLk++ve+k++++ + ikevdiyk++PwdLpk  +v ++ kewyfFs r +ky+++ r+nr+t sg+Wk
  Niben101Scf07673g04009.1  35 LPGFRFHPTDEELVSFYLKRRVENKRIKM-DLIKEVDIYKHDPWDLPKgnTVGGNCKEWYFFSMRGRKYRNSVRPNRVTGSGFWK 118
                               59***************************.99***************5346666778**************************** PP

                       NAM  85 atgkdkevlsk..kgel........vglkktLvfykgrapkgektdWvmheyrl 128
                               atg dk+v+s+  +  +        +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Niben101Scf07673g04009.1 119 ATGIDKPVFSSttT--TsqctdrdcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 170
                               **********8651..344556666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100551.08734203IPR003441NAC domain
SuperFamilySSF1019412.22E-5134202IPR003441NAC domain
PfamPF023655.0E-2536170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSEKRAEKIE NMDLVENIST ATNIKAEDEE EIMQLPGFRF HPTDEELVSF YLKRRVENKR  60
IKMDLIKEVD IYKHDPWDLP KGNTVGGNCK EWYFFSMRGR KYRNSVRPNR VTGSGFWKAT  120
GIDKPVFSST TTTSQCTDRD CIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PPNWKTSNQQ  180
LLNPKSVIIP EAEVWTLCRI FKRTSNYKRF TPDWKQPIIK QSFGDASSKA CSLQSETSDN  240
HSININFKKM EFPHKNNNTA IGGNYQVDQR NTDCNNSQRI ITMLQSSITS SNSSFWNTSA  300
EEQYLFSDGN WDELKSVVDL AIDPCSLFGF R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-472920910174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760718.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1
SwissprotQ9SK552e-88NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1U7V2V30.0A0A1U7V2V3_NICSY; transcription factor JUNGBRUNNEN 1-like isoform X1
STRINGXP_009760718.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.15e-87NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]