PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07678g02010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 91aa    MW: 10652 Da    PI: 8.8685
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07678g02010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.21.9e-322575151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++
  Niben101Scf07678g02010.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 75
                              79***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.2631777IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-401776IPR002100Transcription factor, MADS-box
CDDcd002657.40E-401878No hitNo description
SuperFamilySSF554553.27E-311885IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-341939IPR002100Transcription factor, MADS-box
PfamPF003191.2E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-343954IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-345475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MEFPNEEFES SNSQRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSCFF DFKDRSVENQ I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-211876260Myocyte-specific enhancer factor 2B
1tqe_Q8e-211876260Myocyte-specific enhancer factor 2B
1tqe_R8e-211876260Myocyte-specific enhancer factor 2B
1tqe_S8e-211876260Myocyte-specific enhancer factor 2B
6c9l_A8e-211876260Myocyte-specific enhancer factor 2B
6c9l_B8e-211876260Myocyte-specific enhancer factor 2B
6c9l_C8e-211876260Myocyte-specific enhancer factor 2B
6c9l_D8e-211876260Myocyte-specific enhancer factor 2B
6c9l_E8e-211876260Myocyte-specific enhancer factor 2B
6c9l_F8e-211876260Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762632.14e-49PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_016486557.14e-49PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_019228667.14e-49PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
SwissprotQ408852e-39AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A1S4BCG19e-48A0A1S4BCG1_TOBAC; floral homeotic protein AGAMOUS-like isoform X1
TrEMBLA0A1U7V3189e-48A0A1U7V318_NICSY; floral homeotic protein AGAMOUS isoform X1
TrEMBLI3QNW21e-47I3QNW2_NICBE; Shatterproof
STRINGXP_009762632.11e-48(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-40MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]