PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07682g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 531aa    MW: 58552.8 Da    PI: 6.7116
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07682g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30221278260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               +DgynWrKYGqK v+g+ef+rsYY+Ct+++C +kk+vers+ d+++++++Y g+H+h+k
  Niben101Scf07682g00001.1 221 EDGYNWRKYGQKLVRGNEFTRSYYKCTYPNCLAKKQVERSH-DGHITDVHYIGKHEHPK 278
                               8****************************************.***************85 PP
2WRKY103.99e-33398456159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ++Dg++WrKYGqK v+g+++prsYYrC+ agCpvkk+ver+++dpk+v++tYeg+H+h+
  Niben101Scf07682g00001.1 398 VNDGHRWRKYGQKFVQGNPNPRSYYRCSIAGCPVKKHVERASHDPKMVITTYEGQHDHN 456
                               58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.436215279IPR003657WRKY domain
SuperFamilySSF1182901.83E-24217278IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-26217278IPR003657WRKY domain
SMARTSM007746.3E-34220278IPR003657WRKY domain
PfamPF031063.9E-23221277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-34384456IPR003657WRKY domain
SuperFamilySSF1182901.1E-28390457IPR003657WRKY domain
PROSITE profilePS5081133.063393458IPR003657WRKY domain
SMARTSM007746.3E-38398457IPR003657WRKY domain
PfamPF031063.9E-26399455IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MGTPREEATN EVPSENLQPK PETDPDLATN NPELKEKGSC ESISADVVSG ELQKRLSPAA  60
GAQASKSNQE ETTHPSTWQD VSNNVSQSNQ EDFSLSKLQE YQSETVRQKQ VLKSEGDASG  120
CSHLFILPKD SDAKSCGSES GVIEKVVSPL SGKASNSSDQ IQSQTMEVVV SRSDQQLVTY  180
PARPEKTLDK LQPRRNPDTS GHGLPSDRGT TLFRLPEKPL EDGYNWRKYG QKLVRGNEFT  240
RSYYKCTYPN CLAKKQVERS HDGHITDVHY IGKHEHPKTP SGPQTPPGSV VALQMRQPDI  300
PMLTASEEAE GEKSTVPRET CEPSKPSEAK LALDIVSAGG AMQVTPLKPH KLENEVDKNH  360
GPDSKRQKKD IAKDDTPPIK SHSEPRHIVQ TMSEVNIVND GHRWRKYGQK FVQGNPNPRS  420
YYRCSIAGCP VKKHVERASH DPKMVITTYE GQHDHNMSWF RTLSQITAAP DLSLTGVSGE  480
SRLESGENKH VGESKSESGE NKHVGESRIE SGESGENKHI NIDVVVHIGA N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-31211457275WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775525.10.0PREDICTED: probable WRKY transcription factor 20 isoform X2
RefseqXP_009775526.10.0PREDICTED: probable WRKY transcription factor 20 isoform X2
TrEMBLA0A1U7WMN60.0A0A1U7WMN6_NICSY; probable WRKY transcription factor 20 isoform X2
STRINGXP_009775524.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.18e-70WRKY family protein