PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07691g00014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 354aa    MW: 40276.4 Da    PI: 4.7011
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07691g00014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1862.7e-578635284374
                      GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                                ++  P+ ++++++  qaI + v ++e+vHiiD++i++G+QW  L+qaL              + +     ++++e t erL +f
  Niben101Scf07691g00014.1  86 AYHSVPLAQVTQFAGVQAIIDHVGESEKVHIIDLEIGNGMQWTILMQALLI----------ALCTK----LRHKIEDTCERLMSF 156
                               47889*******************************************964..........44444....5569*********** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               A++l+++f+fn+++++++ +l+ e+++++ +E++a+  ++ l+r+l+++ +l+s    +++++k+++P+ ++v+e ea+hns+ F
  Niben101Scf07691g00014.1 157 AKSLNLSFSFNIVMVEDIMELKQEDFELDDEEVVAIFAQYFLMRMLARPDKLDS----LMRVIKDINPRAMIVIEVEANHNSPVF 237
                               **********************************************77777777....*************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               + rf+eal +y    d+++      +++r+  E e l++ i+ +va+e +er+ rh +   Wr+ +++ G+++v+ls++   +a+
  Niben101Scf07691g00014.1 238 VGRFVEALFFYE---DCMKHD----EKNRTATESEHLNQGIRIIVAAESEERTIRHVKIDVWRMFFGRYGMEEVELSKSSLYEAN 315
                               ***********9...555444....688999****************************************************** PP

                      GRAS 339 lllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               l+l+++  +   ++e ++++l+ gWk+ pL s+SaW+
  Niben101Scf07691g00014.1 316 LVLKNFVcGSSCTLEMNQNCLLVGWKGTPLNSLSAWT 352
                               *******9999*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.0371331IPR005202Transcription factor GRAS
PfamPF035149.2E-5586352IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MFSHPFASSF LSLSEDDTRN MTLVEYLLAS AEKVGQKQFD CAGNLLNECD KINWETGIGK  60
SKGIGMKQLA YIEDSLMSLN SSMIEAYHSV PLAQVTQFAG VQAIIDHVGE SEKVHIIDLE  120
IGNGMQWTIL MQALLIALCT KLRHKIEDTC ERLMSFAKSL NLSFSFNIVM VEDIMELKQE  180
DFELDDEEVV AIFAQYFLMR MLARPDKLDS LMRVIKDINP RAMIVIEVEA NHNSPVFVGR  240
FVEALFFYED CMKHDEKNRT ATESEHLNQG IRIIVAAESE ERTIRHVKID VWRMFFGRYG  300
MEEVELSKSS LYEANLVLKN FVCGSSCTLE MNQNCLLVGW KGTPLNSLSA WTFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-258935186374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246256.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1J6IDJ40.0A0A1J6IDJ4_NICAT; Della protein rgl2
STRINGXP_009800222.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-45RGA-like 1