PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07742g02012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 97aa MW: 10423.5 Da PI: 7.2174

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07742g02012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	79.9	3.2e-25	52	97	3	47
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACg 47 +v+YkeClkNhAas+Ggha+DGCgEfmps +++ +++++lkCaACg Niben101Scf07742g02012.1 52 AVTYKECLKNHAASIGGHAMDGCGEFMPSADSTpSNPTSLKCAACG 97 799*************************9999*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.4E-20	53	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-17	53	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	9.0E-22	54	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.902	55	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MELTCSSNAT KSNPDSENDT PPLIKPLSFS NGTFKNHHFH HHNHYQQPPR AAVTYKECLK 60 NHAASIGGHA MDGCGEFMPS ADSTPSNPTS LKCAACG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016451603.1	2e-53	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LXG0	3e-22	ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBL	A0A1S3YHU2	5e-52	A0A1S3YHU2_TOBAC; zinc-finger homeodomain protein 9-like
STRING	XP_009620302.1	1e-52	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1088	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	5e-22	homeobox protein 34

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]