PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07765g01011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 125aa MW: 14291.4 Da PI: 9.0831

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07765g01011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.1	1.3e-07	34	78	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r+RR++i ++ +eL +l+ +K++ ae+ + A +YI+ Lq Niben101Scf07765g01011.1 34 SIAARQRRKKITEKTQELGKLILGG-----QKMNTAEMFRAAYNYINFLQ 78 6788****************875.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.18E-7	26	81	No hit	No description
PROSITE profile	PS50888	11.788	28	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-11	29	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-11	31	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.8E-8	34	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-5	34	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MLPEFESFPV YKIENGLATK ESSKCNEKNL SAQSIAARQR RKKITEKTQE LGKLILGGQK 60 MNTAEMFRAA YNYINFLQAQ VGILQVMASY QEKLYSSDKC LVPEMFIEAP ANDHEFQHSN 120 PRVLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016493190.1	4e-51	PREDICTED: transcription factor bHLH52-like
Swissprot	Q9SA82	1e-18	BH052_ARATH; Transcription factor bHLH52
TrEMBL	A0A1S4BWD8	1e-49	A0A1S4BWD8_TOBAC; transcription factor bHLH52-like
TrEMBL	A0A1U7XW08	2e-49	A0A1U7XW08_NICSY; transcription factor bHLH52
STRING	XP_009795118.1	3e-50	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3856	22	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	4e-21	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]