PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07766g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 135aa MW: 15322.6 Da PI: 4.5012

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07766g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.5	1.6e-15	49	132	1	90
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k +++s+v+ +l lp +f+++h k ++ +tl +e+ ++e k+ k++ +++GW++F+ +++L +gD +vF+l+ Niben101Scf07766g00007.1 49 FVKPMLQSHVTGGFWLGLPVHFCKTHLPK--RDEFVTLINENEDEFETKYLALKTG----MSGGWRGFAIDHELLDGDALVFQLI 127 89*******************999433..4457***********666666....89*******************99 PP SSSEE CS B3 86 grsef 90 + ++f Niben101Scf07766g00007.1 128 EPTKF 132 86666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.2E-18	40	134	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.79E-21	42	134	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.70E-22	47	135	No hit	No description
Pfam	PF02362	5.0E-13	49	132	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.025	49	135	IPR003340	B3 DNA binding domain
SMART	SM01019	3.4E-16	49	135	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MNLTSSLLLC GMMITLLFLN WNCPTTEGKY DFKDGAELQS EIDADFPSFV KPMLQSHVTG 60 GFWLGLPVHF CKTHLPKRDE FVTLINENED EFETKYLALK TGMSGGWRGF AIDHELLDGD 120 ALVFQLIEPT KFKVE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019257395.1	8e-66	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	9e-47	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A1J6HTZ8	2e-64	A0A1J6HTZ8_NICAT; B3 domain-containing protein
STRING	XP_009612757.1	5e-64	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-49	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]