PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07785g00015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 340aa    MW: 38250.5 Da    PI: 5.1254
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07785g00015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018210232123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C++C+k+ +++  L +H   H
  Niben101Scf07785g00015.1 210 YQCEICNKVLKSSQALGSHKTIH 232
                               9******************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.8E-5432No hitNo description
PfamPF139121.2E-8629IPR007087Zinc finger, C2H2
SMARTSM003550.025628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367633IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
PfamPF139125.4E-6210234IPR007087Zinc finger, C2H2
SuperFamilySSF576672.1E-8210232No hitNo description
SMARTSM003550.021210232IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93210237IPR007087Zinc finger, C2H2
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
SuperFamilySSF576672.1E-8260287No hitNo description
PfamPF139121.6E-9264287IPR007087Zinc finger, C2H2
PROSITE profilePS501579.203265287IPR007087Zinc finger, C2H2
SMARTSM003550.17265287IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280267287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSMEKHKCKL CSRKFSSGKA MGGHMRSHLR TLPLPPKSPP QKQDSAGGRS ESTLSLHSLK  60
PEEEEEEEEE EEEEEEEEEE EEEEIREEKY LGYGLRENPK KSCKIVDPEF LDGAGSVVVH  120
DNESETESTK KPTRRRSKRT RRIFISEEAT EAKKEKSAVF EPEPEPVSSF SDTSPEEDIA  180
ICLMMLSKDV WRSSYESDES KFRELKQGKY QCEICNKVLK SSQALGSHKT IHKKNDSCIE  240
DKNEGIKSKE NSRQLRMKNV DQKVHECPFC GKIYGSGQAL GGHKRSHLLS SSTTASSSSK  300
VGDSLMDSSC AKFPNGFIDL NMPAPIEDED FSQPEVSGVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758380.10.0PREDICTED: zinc finger protein ZAT9-like
RefseqXP_016481923.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S4AZH70.0A0A1S4AZH7_TOBAC; zinc finger protein ZAT9-like
TrEMBLA0A1U7V9840.0A0A1U7V984_NICSY; zinc finger protein ZAT9-like
STRINGXP_009758380.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-29C2H2-like zinc finger protein