PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07829g03021.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 263aa    MW: 29445.5 Da    PI: 9.4066
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07829g03021.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.4e-06109132225
                               -S---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                               k + C+ff  + +C+yG++C+F H
  Niben101Scf07829g03021.1 109 KVKSCHFFGSGQECPYGNKCHFLH 132
                               566788777777************ PP
2zf-CCCH34.73.1e-11172197227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               kt+ C ++ rtG C yG++C+FaHg+
  Niben101Scf07829g03021.1 172 KTKFCVNWERTGSCAYGSKCQFAHGK 197
                               566699******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.6056694IPR000571Zinc finger, CCCH-type
SMARTSM003560.166793IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-57094IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-7106134IPR000571Zinc finger, CCCH-type
SMARTSM003560.011107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6107135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.953107135IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4109132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-15167201IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6170197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342170198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-9170201IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8175197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSMPANNFGI SCKHEEHSST QWPQYNTSGK KCGFNSNAEC QAFKRPRMMN SKMGPEDNWS  60
NMGMTLGPQP PCLQFKRWGR CRYGGECRYT HITGPLNGIR VEDQRNLSKV KSCHFFGSGQ  120
ECPYGNKCHF LHERNKKLDG GVGFCRVSSA ISIATSGHEP KRSVELRKNL LKTKFCVNWE  180
RTGSCAYGSK CQFAHGKAEL QTLGSSNTVE SLGSAGICAP AKNAASECRF LFKWTNVQKI  240
SRIYADWIER VQLVPLSSHT VEN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770534.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
RefseqXP_016470997.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A1S4A2U00.0A0A1S4A2U0_TOBAC; zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A1U7W7A90.0A0A1U7W7A9_NICSY; zinc finger CCCH domain-containing protein 39-like
STRINGXP_009770534.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-24C3H family protein