PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07829g05001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 282aa MW: 30854.7 Da PI: 8.8654

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07829g05001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132	5.5e-41	89	216	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+eWLlqqa+pa++++tgt++++a+++ + s +ss+s+ Niben101Scf07829g05001.1 89 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETVEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSM 173 789******************************************************************9998777777777755 PP TCP 86 ssg.......................................k 89 s + Niben101Scf07829g05001.1 174 SVPsqlrssyfspnfslsqrrglfpgiglssdnsattllnfqT 216 5556666667777777777777777777765444444444432 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.2E-44	93	263	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.845	95	149	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDGGGDDHHL HQHHHHHRPI ATFPFQLLEK KEDEACSSSS NAAAAYTSLA ISNTDNTHTN 60 PSNTPRSNTS SASTLQITAS GADSSKKPPP KRTSTKDRHT KVDGRGRRIR MPALCAARVF 120 QLTRELGHKS DGETVEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSMSVPSQLR 180 SSYFSPNFSL SQRRGLFPGI GLSSDNSATT LLNFQTNLNS SMQLQTKNEL RDNSIDLTDS 240 SAEDNLNRKR RSDLDLEQQH QQQMGSYLLQ XFNGDKCGGQ FK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016492804.1	1e-160	PREDICTED: transcription factor TCP14-like
TrEMBL	A0A1S4BVA7	1e-159	A0A1S4BVA7_TOBAC; transcription factor TCP14-like
STRING	XP_009612852.1	1e-156	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2882	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	3e-38	TCP family protein