PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07849g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 471aa    MW: 53256.5 Da    PI: 7.895
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07849g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.6e-051032123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ C+ksF++  +L  H+r+H
  Niben101Scf07849g01001.1 10 HVCKFCNKSFNSGRSLGGHMRSH 32
                              79********************9 PP
2zf-C2H214.40.0001192111221
                               EETTTTEEESSHHHHHHHHH CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                               +C+ CgksF ++  L  H++
  Niben101Scf07849g01001.1  92 VCKECGKSFQSWKALFGHMK 111
                               6******************7 PP
3zf-C2H211.10.0012379401123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++Cp+C k Fs+   L  H r+H
  Niben101Scf07849g01001.1 379 HECPICFKIFSSGQALGGHKRSH 401
                               79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.7E-4932IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.79E-101032No hitNo description
PfamPF139127.1E-91033IPR007087Zinc finger, C2H2
SMARTSM003550.00361032IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0141032IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SuperFamilySSF576671.79E-1086113No hitNo description
PROSITE profilePS5015710.30591118IPR007087Zinc finger, C2H2
SMARTSM003550.007891113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
PfamPF139121.4E-893115IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492311338IPR007087Zinc finger, C2H2
SuperFamilySSF576674.15E-8311333No hitNo description
PfamPF139122.4E-12311334IPR007087Zinc finger, C2H2
SMARTSM003550.016311333IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280313333IPR007087Zinc finger, C2H2
SuperFamilySSF576674.15E-8374401No hitNo description
PfamPF139129.4E-10379402IPR007087Zinc finger, C2H2
PROSITE profilePS501579.203379401IPR007087Zinc finger, C2H2
SMARTSM003550.22379401IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280381401IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MGEDQELLKH VCKFCNKSFN SGRSLGGHMR SHMINATDGN TTRKMLPNLD MGTEAAGDQS  60
ANYVLRENPK KTSKYAESSE EDTLLQNQKN KVCKECGKSF QSWKALFGHM KCHSDRISSM  120
NNSVEQDSWN SANTNQKQVM DSQSDTETAA PNKKKRSSRK MKRYMATTTS SSLTVVYNAS  180
PCISDIEHDQ LQEEVAMSLI LLSKDMGNWV GQNHVTECSD NNYQPHQNDK DSELVKLSEV  240
KNGKTEQDES FKSNGKIYGV PTNGQKRYKS QVPTDDEKKK KIKVDNENRV VEELVKGWDL  300
TEDFNSKKMK FECTICNKSF HSYQALGGHR ASHKNIKGEN SNIENKDVDH IKIIKNCSNE  360
SAINEKIETN SGSKKLKNHE CPICFKIFSS GQALGGHKRS HLIAEAKRNN NQAVEILQKP  420
TPEIRNFLDL NLPAPVEEEN VLDSSSENIG FQQWWMENSH KHEQLLGLIS N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240439.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1J6K5B80.0A0A1J6K5B8_NICAT; Zinc finger protein zat1
STRINGXP_009623743.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-47C2H2-like zinc finger protein