PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07850g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 375aa    MW: 42582.5 Da    PI: 6.5857
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07850g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.98.3e-3397211199
                               EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 
                               f+k ltpsdv+k++rlv+pk++ae++                ++ +e++  l +edesg+sW+++++y+++s++yvltkGW++Fv
  Niben101Scf07850g02002.1  97 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgnnnntntnnnnESGTEKGLLLGFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFV 181
                               99****************************999999998887555568899********************************** PP

                               HHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                        B3  70 kangLkegDfvvFkldgr.sefelvvkvfrk 99 
                               k+++L++gD+v+F+++ r ++ +l+++++r+
  Niben101Scf07850g02002.1 182 KEKRLDAGDIVLFERH-RfDGDRLFIGWRRR 211
                               **************75.559999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-4289220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-3192210IPR015300DNA-binding pseudobarrel domain
CDDcd100172.62E-2895201No hitNo description
SMARTSM010192.5E-2797212IPR003340B3 DNA binding domain
PROSITE profilePS5086314.09997212IPR003340B3 DNA binding domain
PfamPF023624.2E-3097212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSINHISSSE LPETVWWTKQ QQYMMMDSSS KKTSSPSQFY HHHPTTPPET QTTTMFGFNL  60
NNMSNNEEDE ELEEQITEDK DQNIEQREEE IPKEHLFEKP LTPSDVGKLN RLVIPKQHAE  120
KYFPLSGNNN NTNTNNNNES GTEKGLLLGF EDESGKSWRF RYSYWNSSQS YVLTKGWSRF  180
VKEKRLDAGD IVLFERHRFD GDRLFIGWRR RNTAVSASVQ ESSAVVAPPG MVGGGGWAPV  240
YYSGSGGHPY PGAALPYQPD CLHAGGRVLQ NQTTSVNNTR RQVRLFGVNL DCEADGPSWS  300
EPPSTPDGGG SSMSSHHHHQ HHQGPGQGQA SEHYYQYQFQ HSKPHVAASS YNNIHHNHMD  360
MNFSRDVNQM RYHQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-49932114113B3 domain-containing transcription factor NGA1
5os9_B2e-49932114113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776788.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ9FNI31e-66Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A1U7WDQ70.0A0A1U7WDQ7_NICSY; B3 domain-containing protein At2g36080-like
STRINGXP_009776788.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.13e-63B3 family protein