PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07850g08004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 206aa MW: 23126 Da PI: 8.6946

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07850g08004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	76.2	7.8e-24	8	83	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++w+fF++ + ++a+g r++r t++gyWkatg+ v+s++ + +g k+t+vfykgrap+g+kt W m+ey++ Niben101Scf07850g08004.1 8 DDSEQWFFFIPIQDREARGGRPTRLTTEGYWKATGTPGYVYSSNCRIIGGKRTMVFYKGRAPNGKKTLWKMNEYKA 83 46679*********************************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	30.147	1	111	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-25	9	111	IPR003441	NAC domain
Pfam	PF02365	1.8E-9	12	82	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MAGEGIRDDS EQWFFFIPIQ DREARGGRPT RLTTEGYWKA TGTPGYVYSS NCRIIGGKRT 60 MVFYKGRAPN GKKTLWKMNE YKASDGEASA TNCVTNLKLR HEFSLCRIYK KSKCVRGFDR 120 RPAGFGIIEG TVLPQPLNAA GNYEATPSKK NINPSNDKNL LAPNVYLMES SSSGEEHART 180 PQPVETSNGD LDFSDVPLWD WDCHFI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-17	11	116	71	170	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-17	11	116	71	170	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-17	11	116	71	170	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-17	11	116	71	170	NO APICAL MERISTEM PROTEIN
3swm_A	4e-17	11	112	74	169	NAC domain-containing protein 19
3swm_B	4e-17	11	112	74	169	NAC domain-containing protein 19
3swm_C	4e-17	11	112	74	169	NAC domain-containing protein 19
3swm_D	4e-17	11	112	74	169	NAC domain-containing protein 19
3swp_A	4e-17	11	112	74	169	NAC domain-containing protein 19
3swp_B	4e-17	11	112	74	169	NAC domain-containing protein 19
3swp_C	4e-17	11	112	74	169	NAC domain-containing protein 19
3swp_D	4e-17	11	112	74	169	NAC domain-containing protein 19
4dul_A	3e-17	11	116	71	170	NAC domain-containing protein 19
4dul_B	3e-17	11	116	71	170	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801687.1	1e-137	PREDICTED: NAC domain-containing protein 90-like
TrEMBL	A0A1U7YC31	1e-135	A0A1U7YC31_NICSY; NAC domain-containing protein 90-like
STRING	XP_009801687.1	1e-136	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-51	NAC domain containing protein 90