PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07883g07003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 182aa    MW: 20766.1 Da    PI: 9.3715
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07883g07003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1226.9e-3821136289
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec. 73 
                               +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++            s ss ++  
  Niben101Scf07883g07003.1  21 TGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpsidaadgS-SSGNNIv 104
                               79**************************************************************9999877666532.2223333 PP

                       TCP  74 .eaesssssasnsssg...............k 89 
                                e++++++++++ + +               +
  Niben101Scf07883g07003.1 105 lEQQQQQNQQQEFQLQrqleennpsgwilphH 136
                               44444444443222223343334444444430 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.0E-3421124IPR005333Transcription factor, TCP
PROSITE profilePS5136932.7852381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKRATGGEIV QVEGGHILRS TGKKDRHSKV YTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY  60
DRPSKAVDWL IKKAKNAIDK LDELPPWNPS IDAADGSSSG NNIVLEQQQQ QNQQQEFQLQ  120
RQLEENNPSG WILPHHQQTF YSQQPQGAVF PQREPLQSNS SHLIHAWEER PPISHISPAF  180
AY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-232881154Putative transcription factor PCF6
5zkt_B4e-232881154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783353.11e-107PREDICTED: transcription factor TCP4-like isoform X2
RefseqXP_016448735.11e-107PREDICTED: transcription factor TCP4-like isoform X2
TrEMBLA0A1S3Y9901e-106A0A1S3Y990_TOBAC; transcription factor TCP4-like isoform X2
TrEMBLA0A1U7WXM01e-106A0A1U7WXM0_NICSY; transcription factor TCP4-like isoform X2
STRINGXP_009629629.13e-69(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.39e-49TCP family protein