PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07894g01004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 115aa MW: 13313 Da PI: 9.8181

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07894g01004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.2	5.2e-30	54	107	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+a+e+L G+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ Niben101Scf07894g01004.1 54 PRLRWTPDLHLSFVRAIERLDGQERATPKLVLQTMNVRGLSIAHVKSHLQMYRS 107 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-28	50	108	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.162	50	110	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-14	52	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-22	54	109	IPR006447	Myb domain, plants
Pfam	PF00249	3.9E-7	55	106	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MSYSSDLNEE SNDAIGLRDD MIEKTAEGNS SFEDIGNYEN KRSRVRQYVR SKLPRLRWTP 60 DLHLSFVRAI ERLDGQERAT PKLVLQTMNV RGLSIAHVKS HLQMYRSKKL GEFGQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-19	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-19	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-19	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-19	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-19	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-19	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-19	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-19	55	109	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018628204.1	2e-65	PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
Swissprot	Q700D9	8e-27	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A1J6K834	5e-64	A0A1J6K834_NICAT; Putative myb family transcription factor
STRING	XP_009607761.1	1e-64	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5516	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-39	G2-like family protein