PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07895g04011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 188aa    MW: 21812.5 Da    PI: 6.2742
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07895g04011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-0918482048
                              TTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding 20 Ggg...tWktIartmgkgRtlkqcksrwqkyl 48
                              G++   +W+ Ia  ++ gRt++++k++w++yl
  Niben101Scf07895g04011.1 18 GSReefRWAQIATQLP-GRTDNEIKNFWNSYL 48
                              5557778*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.709152IPR017930Myb domain
SuperFamilySSF466891.95E-91659IPR009057Homeodomain-like
PfamPF002491.0E-71748IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-132465IPR009057Homeodomain-like
CDDcd001673.59E-62448No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MARYSEKKEA VARRNTMGSR EEFRWAQIAT QLPGRTDNEI KNFWNSYLKK KLIKQGIDPN  60
THKPLSENQV RNETDCTDKA SMLLIQQLPN MSISANMEQP FHLSEASVDC EANRQLTEAS  120
RNQLVSKQVF DPLFLFEFQA NVDPSEYNSE LLGQSQQNLR PYDHQNQIEG NPNFGFCSML  180
KNEFIIYK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773279.11e-108PREDICTED: myb-related protein 330-like isoform X1
TrEMBLA0A1U7WF531e-107A0A1U7WF53_NICSY; myb-related protein 330-like isoform X1
STRINGXP_009773279.11e-108(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-20myb domain protein 86