PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07919g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 507aa MW: 55009.4 Da PI: 5.6948

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07919g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.3e-09	327	375	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Niben101Scf07919g00002.1 327 NSHSLAERIRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 375 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.50E-11	322	379	No hit	No description
SuperFamily	SSF47459	4.45E-17	322	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.434	324	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	325	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-6	327	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-10	330	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MDIASKNDSE PEKRNNEEVM NYQSSNVSSE WQLSGSNLTN VSMGMIQSNN QMVDSFCPTS 60 WDQHTNSSLG FCDANVQINP STSNPLGTIG TNLTPSNAML KGGMFLPPAP MMLPQSLAQF 120 PADSGFIERA ARFSCFSGGN FGDMMNPFSL PESMNPYYRG PPPMQGPQEV LASNGLKSPS 180 AQKQHLSNVG ESSKEVCLTT DHRNTERSPL KNEKKSENFD EVAGVSGNDS GDAECSSRQE 240 EMDGVGEESY GKNIGSKKRK RGGKDAELQQ PPAESGKDQI EIQKGEQNLN LVAGKSGGKN 300 GKHGSQASDP IKEDYIHVRA RRGQATNSHS LAERIRREKI SERMKFLQDL VPGCNKVTGK 360 AVMLDEIINY VQSLQRQVEF LSMKLATVNP QLDFNIDGLL AKNILQSRAG PSSSLAFPPD 420 MTMQYPPLHP PQPGYGIPSD AFRRAITPHL AATSGGPSEY KNPSSEGPSV WDNELHNIVQ 480 MGLNSSIPLS SEDLSGSLPA GRMKAEP

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MDIASKNDSE PEKRNNEEVM NYQSSNVSSE WQLSGSNLTN VSMGMIQSNN QMVDSFCPTS  60
WDQHTNSSLG FCDANVQINP STSNPLGTIG TNLTPSNAML KGGMFLPPAP MMLPQSLAQF  120
PADSGFIERA ARFSCFSGGN FGDMMNPFSL PESMNPYYRG PPPMQGPQEV LASNGLKSPS  180
AQKQHLSNVG ESSKEVCLTT DHRNTERSPL KNEKKSENFD EVAGVSGNDS GDAECSSRQE  240
EMDGVGEESY GKNIGSKKRK RGGKDAELQQ PPAESGKDQI EIQKGEQNLN LVAGKSGGKN  300
GKHGSQASDP IKEDYIHVRA RRGQATNSHS LAERIRREKI SERMKFLQDL VPGCNKVTGK  360
AVMLDEIINY VQSLQRQVEF LSMKLATVNP QLDFNIDGLL AKNILQSRAG PSSSLAFPPD  420
MTMQYPPLHP PQPGYGIPSD AFRRAITPHL AATSGGPSEY KNPSSEGPSV WDNELHNIVQ  480
MGLNSSIPLS SEDLSGSLPA GRMKAEP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593502.1	0.0	PREDICTED: transcription factor bHLH49-like
Refseq	XP_009593503.1	0.0	PREDICTED: transcription factor bHLH49-like
Refseq	XP_009593504.1	0.0	PREDICTED: transcription factor bHLH49-like
TrEMBL	A0A1S4DJ70	0.0	A0A1S4DJ70_TOBAC; transcription factor bHLH49-like
STRING	XP_009593502.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-105	bHLH family protein