PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07926g04007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 372aa MW: 41996.8 Da PI: 6.2555

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07926g04007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35	3.2e-11	87	123	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLe 39 +k+ rr+++NReAAr+sR+RKka++++Le+ k k L+ Niben101Scf07926g04007.1 87 DKALRRLAQNREAARKSRLRKKAYVQQLENsKLKLLQ 123 7999*************************83444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-5	84	147	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.737	86	130	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-7	88	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.57E-6	88	130	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.7E-7	88	134	No hit	No description
PROSITE pattern	PS00036	0	91	106	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.1E-28	175	249	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MNSTYTQFVA SKRMGICDPI HQIGMWGDFK GSSYPDTSAT LILEVENCLQ NEMPIMEKRV 60 HNEIEELSHG TVGTSNRYEP EARKPIDKAL RRLAQNREAA RKSRLRKKAY VQQLENSKLK 120 LLQLEQELER TRQQGRYAGG GLDESQIGYT GTANSGIAAF EMEYGHWVEE QDRQTDELRS 180 ALNSQVGEIE LHLLVEGCLN HYFDLFRMKA TAAHADVLFL MTGTWKTSAE RFFLWIAGFR 240 PSELLKVLTP NVEPLTEQQL REVRNLTQSC QQAEDALSQG MVKLHQILAE AVAAGTLGEG 300 IILPQMAATI EKLEALVRFV NQADHLRQET LLQMSCILTP QQSAQGLLAL GEYFKRLRAL 360 SSLWTSRTSE PA

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MNSTYTQFVA SKRMGICDPI HQIGMWGDFK GSSYPDTSAT LILEVENCLQ NEMPIMEKRV  60
HNEIEELSHG TVGTSNRYEP EARKPIDKAL RRLAQNREAA RKSRLRKKAY VQQLENSKLK  120
LLQLEQELER TRQQGRYAGG GLDESQIGYT GTANSGIAAF EMEYGHWVEE QDRQTDELRS  180
ALNSQVGEIE LHLLVEGCLN HYFDLFRMKA TAAHADVLFL MTGTWKTSAE RFFLWIAGFR  240
PSELLKVLTP NVEPLTEQQL REVRNLTQSC QQAEDALSQG MVKLHQILAE AVAAGTLGEG  300
IILPQMAATI EKLEALVRFV NQADHLRQET LLQMSCILTP QQSAQGLLAL GEYFKRLRAL  360
SSLWTSRTSE PA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009779143.1	0.0	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like
Refseq	XP_009779144.1	0.0	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like
Refseq	XP_016510412.1	0.0	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like
Refseq	XP_016510413.1	0.0	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like
Swissprot	P14232	0.0	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A1S4DAL7	0.0	A0A1S4DAL7_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A-like
TrEMBL	A0A1U7WKQ1	0.0	A0A1U7WKQ1_NICSY; TGACG-sequence-specific DNA-binding protein TGA-1A-like
STRING	XP_009779143.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-143	bZIP family protein

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]