PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07926g07004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 203aa    MW: 23054.2 Da    PI: 8.4691
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07926g07004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18755254
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                              +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Niben101Scf07926g07004.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                              69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.67E-33666No hitNo description
SMARTSM003801.5E-38770IPR001471AP2/ERF domain
PROSITE profilePS5103220.798764IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-20766IPR016177DNA-binding domain
PfamPF008472.4E-11756IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-33764IPR001471AP2/ERF domain
PRINTSPR003673.4E-11819IPR001471AP2/ERF domain
PRINTSPR003673.4E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
NNFPYNPNMP QTSSSKLLSA TLTAKLHKCY MASLQMAKNS AQEQQQQPPP RKIQTSYAQT  120
AVANVGNHVP YETKPQMLMS KPTFLAQQQE AAAGVNWGVM KVEAVEHTPQ FINTLEEDHI  180
EQMIEELLDY GSIELCSVVS SHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-17868667ATERF1
3gcc_A5e-17868667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619132.11e-144PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_016513393.11e-144PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-72ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S4DJ351e-143A0A1S4DJ35_TOBAC; ethylene-responsive transcription factor ERF003-like
STRINGXP_009619132.11e-144(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.18e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]