PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08001g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 273aa    MW: 28978.4 Da    PI: 8.1471
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08001g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016107129123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC+ C+k Fs+   L  H  +H
  Niben101Scf08001g00002.1 107 YKCSVCDKAFSSYQALGGHKASH 129
                               9***********99999998887 PP
2zf-C2H2140.00015166188123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k F++   L  H r+H
  Niben101Scf08001g00002.1 166 HVCTICHKAFPTGQALGGHKRRH 188
                               79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-498131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.0E-8106129No hitNo description
SMARTSM003550.0073107129IPR015880Zinc finger, C2H2-like
PfamPF139125.7E-13107131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
SuperFamilySSF576671.0E-8161188No hitNo description
SMARTSM003550.071166188IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556166193IPR007087Zinc finger, C2H2
PfamPF139121.0E-11166190IPR007087Zinc finger, C2H2
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MALEALKSPT AATPTLPPRY EDVDEIDNLD SWAKGKRSKR PRIDTPPTEE EYLALCLIML  60
ARSGAGTGTR PGLTDATTSQ QPADKKTVEL PPIHKKEVAT EQTEQSYKCS VCDKAFSSYQ  120
ALGGHKASHR KTTTTATAAS DDNNPSTSTS TSAVNITALN PSGRSHVCTI CHKAFPTGQA  180
LGGHKRRHYE GKLGGNSRDL GGGGGHSGSV LTTSDGGAST HTLRDFDLNM PASPELQLGL  240
SIDCGRKSQL LPIDQEVESP MPAKKPRLLF SLG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240274.11e-174PREDICTED: zinc finger protein ZAT10-like
TrEMBLO651501e-174O65150_TOBAC; Osmotic stress-induced zinc-finger protein
STRINGXP_009625229.11e-164(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.15e-54salt tolerance zinc finger