PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08001g02016.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 364aa MW: 40477.8 Da PI: 5.0397

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08001g02016.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.3e-10	289	329	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq Niben101Scf08001g02016.1 289 RKRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 329 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-14	279	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.428	279	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-12	284	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-11	285	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.20E-11	288	333	No hit	No description
Pfam	PF00010	6.6E-8	289	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MEPVGAILSE GEWSSLSGTC STEEADFMAQ LFGNCPNDQL PSNSNTRIPN FWTSHDQSSM 60 NVGVLTNQVP MYNSSVETNN SMYGFSQEST DNSGGRGIHF PHFHATLLTN DSVEDKMSYP 120 SHQVPPNNVI EADAIDFLNK ELCNESMESG ENMPESDLHG KGLQLGREYD QMQVREQDHK 180 MESLSESSKK RSRLPAHDVP KNKRSVKPKK NMKSIADDEI GNKENNSNVL HRQSSFSCCS 240 EDESNVSNYE LYGLASCDNS KGASAPLNSN GKSRASRGSA TDPQSLYARK RRERINERLR 300 ILQSLVPNGT KVDISTMLEE AVQYVKFLQL QIKLLSSDDL WMYSPIAYNG MDLGLDLKIG 360 TPNS

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MEPVGAILSE GEWSSLSGTC STEEADFMAQ LFGNCPNDQL PSNSNTRIPN FWTSHDQSSM  60
NVGVLTNQVP MYNSSVETNN SMYGFSQEST DNSGGRGIHF PHFHATLLTN DSVEDKMSYP  120
SHQVPPNNVI EADAIDFLNK ELCNESMESG ENMPESDLHG KGLQLGREYD QMQVREQDHK  180
MESLSESSKK RSRLPAHDVP KNKRSVKPKK NMKSIADDEI GNKENNSNVL HRQSSFSCCS  240
EDESNVSNYE LYGLASCDNS KGASAPLNSN GKSRASRGSA TDPQSLYARK RRERINERLR  300
ILQSLVPNGT KVDISTMLEE AVQYVKFLQL QIKLLSSDDL WMYSPIAYNG MDLGLDLKIG  360
TPNS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019264160.1	0.0	PREDICTED: transcription factor bHLH84
TrEMBL	A0A1J6JNX6	0.0	A0A1J6JNX6_NICAT; Transcription factor bhlh84
STRING	XP_009598406.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA639	22	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	7e-50	bHLH family protein