PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08006g01028.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 411aa    MW: 45593.1 Da    PI: 6.0596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08006g01028.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.99.9e-052633021255
                               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Niben101Scf08006g01028.1 263 RREKIGERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 302
                               9*****************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.426251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-5263304No hitNo description
Gene3DG3DSA:4.10.280.106.2E-10263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-10264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDKKNMFLNN VNPMNELNSF YNPSWENDPF ESTLSSIVSS PVTSNMMPSN SNNGSGDNFV  60
LRELIGKLGN ICNSGEISPI SYVNSTNNSC YITPLNSPPR LNLSNFDHQI NGNLQLLGVT  120
HMSNSANLAH FSVDSEFVNR NVPNLESGKL SRVSSSKCIN VSGSELGVQE SEFGGSMENS  180
SVSEQIPLGN DANSKKRKSL PKKKAKETNA KNVNVSIEVL ESSAKRSKSD EKNGSKTDVA  240
EAKEQNKDNP KTTEPPKDYI HVRREKIGER MKFLQDLVPG CNKVTGKAVM LDEIINYVQS  300
LQCQFLSMKL SNMNPTMDFN AESLLSKNMF QSLESLHHNM HPSETSAAFP YEFQSQQCSN  360
GYMARNVNIM QLPHMEEFVE QTPQVPTFFG DDLHSVIQMG FGQIQPQNVP G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206PKKKAKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469768.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A1S3ZZG00.0A0A1S3ZZG0_TOBAC; transcription factor bHLH62-like
STRINGXP_009760399.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-51bHLH family protein