PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08028g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 332aa MW: 37434.2 Da PI: 9.3325

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08028g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.6	1.2e-53	26	153	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelvv+yLkkk++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWka Niben101Scf08028g00005.1 26 LPPGFRFHPTDEELVVHYLKKKAAFAPLPV-DIIAEVDLYKFNPWELPAKANFGEREWYFFSPRDRKYPNGARPNRAATSGYWKA 109 79**************************.99***********99999**************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk+v+++ ++++vg+kk Lvfy g+ pkg+kt+W+mheyr+ Niben101Scf08028g00005.1 110 TGTDKPVFTAgENKKVGVKKALVFYGGKPPKGVKTNWIMHEYRI 153 ****9977888*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-64	21	188	IPR003441	NAC domain
PROSITE profile	PS51005	61.547	26	187	IPR003441	NAC domain
Pfam	PF02365	1.0E-27	27	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MESTTDSSTG TPPLRLQPLQ PSQPQLPPGF RFHPTDEELV VHYLKKKAAF APLPVDIIAE 60 VDLYKFNPWE LPAKANFGER EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVFTAG 120 ENKKVGVKKA LVFYGGKPPK GVKTNWIMHE YRIAENKTNN KPPGCDIANK KGSLRLDDWV 180 LCRIYKKNNT QRPIDHHERD DMNDTMGSTI PTCIANSIPP FEQNMYEGII HKNTSNMINN 240 NVGSISSSVL PPKRPLPAGL YWNEEHNANS TSAKRFLAEN SLDDGLNMNI TRPDEHNGFS 300 SQLPQNQVLG SLSDGVVFRQ PYNQVTGMNW YS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-74	22	190	13	168	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-74	22	190	13	168	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-74	22	190	13	168	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-74	22	190	13	168	NO APICAL MERISTEM PROTEIN
3swm_A	8e-74	22	190	16	171	NAC domain-containing protein 19
3swm_B	8e-74	22	190	16	171	NAC domain-containing protein 19
3swm_C	8e-74	22	190	16	171	NAC domain-containing protein 19
3swm_D	8e-74	22	190	16	171	NAC domain-containing protein 19
3swp_A	8e-74	22	190	16	171	NAC domain-containing protein 19
3swp_B	8e-74	22	190	16	171	NAC domain-containing protein 19
3swp_C	8e-74	22	190	16	171	NAC domain-containing protein 19
3swp_D	8e-74	22	190	16	171	NAC domain-containing protein 19
4dul_A	7e-74	22	190	13	168	NAC domain-containing protein 19
4dul_B	7e-74	22	190	13	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016466988.1	0.0	PREDICTED: NAC transcription factor 56-like
Swissprot	Q9LD44	1e-106	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A1S3ZRT2	0.0	A0A1S3ZRT2_TOBAC; NAC transcription factor 56-like
STRING	XP_009759753.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-106	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]