PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08032g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 104aa    MW: 11551.4 Da    PI: 11.054
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08032g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.75.1e-15327684127
                       NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                                atg+dk+++s+ +++ vglkk+Lvfy+gra +g ktdW+mhe+r
  Niben101Scf08032g00005.1  32 TATGTDKPIYSSySTKCVGLKKSLVFYRGRATRGIKTDWMMHEFR 76 
                               58*********977788***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.104197IPR003441NAC domain
SuperFamilySSF1019411.03E-143381IPR003441NAC domain
PfamPF023656.2E-63476IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MKLTKPIADK GKKSGLFTVQ GTVSTGTALI QTATGTDKPI YSSYSTKCVG LKKSLVFYRG  60
RATRGIKTDW MMHEFRRPTT NIESVRPTKF LDRNFPPNVG HITA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240595.12e-35PREDICTED: putative NAC domain-containing protein 94
TrEMBLA0A1J6KDU65e-34A0A1J6KDU6_NICAT; Protein fez
STRINGXP_009785299.13e-34(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-23NAC domain containing protein 94