PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08039g00019.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 145aa MW: 16639 Da PI: 9.9004

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08039g00019.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	34.3	3.1e-11	3	48	2	47
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +ie k tfskRr gi KK +EL C++++ +++ s+tgk + Niben101Scf08039g00019.1 3 KIEKKDDLFATFSKRRVGIYKKSSELIAECGVDIGIVVSSPTGKPF 48 6777777889*********************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	5.23E-16	1	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.867	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.7E-7	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-16	3	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MKKIEKKDDL FATFSKRRVG IYKKSSELIA ECGVDIGIVV SSPTGKPFSF FHPTDDAIIA 60 RFQNPDMQLS EITRLVAANA RNNVNYPDSR LEEFDTIKEV VTAQARFYDK IIETRKSGWW 120 ESIEQLNADE VSKKTKGRQK IHIKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019231004.1	3e-86	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A314KIB7	8e-85	A0A314KIB7_NICAT; Agamous-like mads-box protein agl62
STRING	XP_009630258.1	3e-76	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA382	20	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	6e-20	M-type_MADS family protein