PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08127g05002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 521aa    MW: 57346.4 Da    PI: 6.976
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08127g05002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09374422355
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Niben101Scf08127g05002.1 374 NSHSLAERLRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVRSLQ 422
                               58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.3E-17368438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-17368440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.548371421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6374422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-9375426No hitNo description
SMARTSM003533.5E-10377427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MRAEFRKVVF LILKTCGKGE LFRVLINLLH FQGMDMVSKD DAEPEKRCED ALNFQSPNMS  60
SDWQLSGSNL TNASVRMVSN SSPMVDSFCA SVWDHPISSS NLGLCDTNIQ MIHCTTNADC  120
LRTNVNGMLG MSWTQPNAMS LKGGVFVPPT PGMLPQSLFQ FPADSGFIER AARFSCFGGG  180
KVGDMMNPFT IPSSPNTYRN AQALHRPQEV FASNRLQSPS AAISQKQHIG NGVEGSEDVS  240
LPLEHGATDR SPIKHEKNES LARSWDEAKE CVGISGNESD EADCSGHQEE VEGKDSSARG  300
LDSKKRKRSG QDTELDQTKG AQQLSAERTK DQTEIQKGEQ NRRGGKNGKQ GSQSADPSKE  360
EYIHIRARRD QATNSHSLAE RLRREKISER MKYLQDLVPG CNKVTGKAVM LDEIINYVRS  420
LQRQVEFLSM KLATINPRLD FNIDGLLAKD ILHSRAIPSS SLAFAPDMTM PYHSLQQLQP  480
DLLQSGLPGL GNSTDALLRS IYPHLSATSG SYKESSSQAA F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303308KKRKRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792953.10.0PREDICTED: transcription factor bHLH49-like isoform X1
RefseqXP_009792959.10.0PREDICTED: transcription factor bHLH49-like isoform X2
RefseqXP_016462240.10.0PREDICTED: transcription factor bHLH49-like
TrEMBLA0A1S3ZCR30.0A0A1S3ZCR3_TOBAC; transcription factor bHLH49-like
TrEMBLA0A1U7XQ100.0A0A1U7XQ10_NICSY; transcription factor bHLH49-like isoform X1
TrEMBLA0A1U7Y1490.0A0A1U7Y149_NICSY; transcription factor bHLH49-like isoform X2
STRINGXP_009792953.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-102bHLH family protein