PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08142g03005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 599aa    MW: 66867.7 Da    PI: 6.7812
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08142g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.63.8e-33190311389
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ss 67 
                               g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++a++ai+el ++                    + 
  Niben101Scf08142g03005.1 190 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAQAAIDELEELppwkpttgpianstnfdqekE- 273
                               89*************************************************************999987665533332222220. PP

                       TCP  68 ssaseceaesssssasnsssg..........................k 89 
                                         ++++ ++++++                          +
  Niben101Scf08142g03005.1 274 ----------QKENFDTQQNDvnvsiggssskramimlgnetearvlN 311
                               ..........22222211111345555543334444443333332220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.2E-29190333IPR005333Transcription factor, TCP
PROSITE profilePS5136933.621191249IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MAAVPFGEAT TTTATTTVSD FTTEEESEIV TKKERFQHQK LEHQKHNNKV LSLDPQRKNQ  60
YHHFNNQNVE EQEQEEKEEE KDHYQEQVFH ANHHLHSHFQ QPHEVFSVHN NHFLYQNLDT  120
IQQLQQPQQT QNPKQPKKRS YISSSSSSQK KILEHAKPGE KMGTSSRFGL RNSGGEIVEV  180
QGGHIIRSIG RKDRHSKVCT AKGPRDRRVR LSAHTAIQFY DVQDRLGYDR PSKAVDWLIK  240
KAQAAIDELE ELPPWKPTTG PIANSTNFDQ EKEQKENFDT QQNDVNVSIG GSSSKRAMIM  300
LGNETEARVL NQTNSGNSSG DNANASFLPQ SLDSDTIADT IKSFFPVGGS NESSSSSAMQ  360
FQSFQEHNLL SRTSSQSQDL RLSLQSFQDP ILLHHQNQQA HHTEQEQTHF QASNFFNGST  420
QLGFDASGWS LSEHQQQQPV ELGRVQGLAA ARAGGDSTGI TLCGQAVAGT AGGYLFNSPP  480
APPLLQQLFG QNQYFSQRGP LQSSYSPSIR AWIDPSAIAI ATADPIHHHQ AVLPMYSTSI  540
SGIGFASELG GFSGFRIPAR IQETSTILQM EAKEGQCFIV EFDSVAMHRG RRILSKFQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-20196249154Putative transcription factor PCF6
5zkt_B4e-20196249154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785152.10.0PREDICTED: transcription factor TCP4
RefseqXP_016472433.10.0PREDICTED: transcription factor TCP4-like
TrEMBLA0A1S4A7100.0A0A1S4A710_TOBAC; transcription factor TCP4-like
TrEMBLA0A1U7WZ070.0A0A1U7WZ07_NICSY; transcription factor TCP4
STRINGXP_009785152.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-77TCP family protein