PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08149g00015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 485aa    MW: 54586.7 Da    PI: 6.6046
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08149g00015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.83.9e-34141062103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl k+y++++d ++++++sws+++nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+Yg++kv+ +          weF+++ F
  Niben101Scf08149g00015.1  14 FLCKTYDMVDDLSTDSVVSWSKSNNSFVVWNVLEFSRDILPKYFKHNNFSSFVRQLNTYGYRKVDPDC---------WEFANEGF 89 
                               9***************************************************************9987.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                +g+k+ll++i r+k +
  Niben101Scf08149g00015.1  90 LRGHKHLLKTISRRKPS 106
                               **************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-36898IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.43E-339103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5910103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.9E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEAIHEIGNS PPPFLCKTYD MVDDLSTDSV VSWSKSNNSF VVWNVLEFSR DILPKYFKHN  60
NFSSFVRQLN TYGYRKVDPD CWEFANEGFL RGHKHLLKTI SRRKPSQMQV HQDTASQVQS  120
VSAESCIEVG KFGIKEEVER LKRDKNVHME ELVKLKQQQQ ATDHCLENVG QRLHLMEQRQ  180
QQTMSFLAKA LQSPGFIAEL IHRQNEGNRR IPGMKKKRRF PNQEEEIYAG KPVSTMHDRQ  240
IVRYQPLMNE AAKVLLQKIL KTNASGRLET KVKNTNGFLT NHGHAFENTL DSAGICSRIS  300
GVTLPQLPTS SQSHLTADSG FPFNSNLSAI PEIQYSPSLV PGEAKVPHFP GFNALNFQAD  360
HVLPAVSEGY GINTLDNFGI TDLKQLGIGD LPHIDRMQGI VDGVTSVVPD RFSSDTDIDI  420
FLDEMSKLPG INDIFWDQIL SASPLTGDKH EIGSLALEDS LTKEEDVPGI QESAVDRKKH  480
MSYLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-231210327129Heat shock factor protein 1
5d5v_B3e-231210327129Heat shock factor protein 1
5d5v_D3e-231210327129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214218KKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757456.10.0PREDICTED: heat stress transcription factor A-1-like
RefseqXP_009757457.10.0PREDICTED: heat stress transcription factor A-1-like
RefseqXP_009757458.10.0PREDICTED: heat stress transcription factor A-1-like
RefseqXP_009757460.10.0PREDICTED: heat stress transcription factor A-1-like
RefseqXP_009757461.10.0PREDICTED: heat stress transcription factor A-1-like
TrEMBLA0A1U7UMQ40.0A0A1U7UMQ4_NICSY; heat stress transcription factor A-1-like
STRINGXP_009757456.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-124heat shock factor 3