PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08172g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 88aa MW: 11069.8 Da PI: 10.3074

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08172g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.7	1.3e-10	12	51	17	56
HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++F+++++p ++r+eL k+lg ++ q+k+WF N+ ++ k Niben101Scf08172g00001.1 12 KFFKECPHPYDKQRKELGKRLGFDTLQIKFWFENKHTQIK 51 79********************************988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-9	10	54	IPR009057	Homeodomain-like
CDD	cd00086	3.19E-5	12	54	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.3E-10	12	60	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.479	12	53	IPR001356	Homeobox domain
Pfam	PF00046	3.2E-8	12	51	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
LLLQLINWSF YKFFKECPHP YDKQRKELGK RLGFDTLQIK FWFENKHTQI KAHHERHENT 60 HVRWKNEKYC AENIYKRDRR KGIIVFSY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018628742.1	2e-29	PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like isoform X3
Swissprot	Q94C37	3e-25	HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBL	A0A1S4D6C3	1e-27	A0A1S4D6C3_TOBAC; homeobox-leucine zipper protein MERISTEM L1-like
TrEMBL	A0A1U7Y2Y7	1e-27	A0A1U7Y2Y7_NICSY; homeobox-leucine zipper protein MERISTEM L1-like
STRING	XP_009793614.1	2e-28	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13886	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.3	1e-27	homeodomain GLABROUS 2