PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08249g02004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 170aa    MW: 19001.2 Da    PI: 10.3992
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08249g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.9e-1783132355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+++AeIrdp   + k  r++lg+f+   +Aa+a++ a+ k++g
  Niben101Scf08249g02004.1  83 YRGVRRRP-WGKFAAEIRDP---NrKGSRIWLGTFDADVDAARAYDCAAFKMRG 132
                               9*******.**********9...6566**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.10582140IPR001471AP2/ERF domain
CDDcd000184.04E-2882140No hitNo description
PfamPF008474.4E-1282132IPR001471AP2/ERF domain
SMARTSM003808.7E-3682146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3182141IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2282142IPR016177DNA-binding domain
PRINTSPR003672.9E-138394IPR001471AP2/ERF domain
PRINTSPR003672.9E-13122142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MENVLFTCSR MEVRNRSNGH GNQALGVEGL IKIDNVSIDD FPEFKTNSDT NLSPTSDSRV  60
SSNSTISSDT TSSNNNENKE RNYRGVRRRP WGKFAAEIRD PNRKGSRIWL GTFDADVDAA  120
RAYDCAAFKM RGRKAILNFP MDAGKSGAPA NIGRKRRRDN GIQLEMLINL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2679141264ATERF1
3gcc_A1e-2679141264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257925.13e-87PREDICTED: ethylene-responsive transcription factor ERF106-like
SwissprotQ9LY051e-44EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A1J6HU706e-86A0A1J6HU70_NICAT; Ethylene-responsive transcription factor erf106
STRINGXP_009597659.12e-76(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.18e-46ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]